The Animals (API)
Animals listed in alphabetical order.
BONOBO
To run BONOBO you can first initialize the class with the expression data, and then run the compute_bonobo function to get the results:
bonobo_obj_sparse = Bonobo(expression_file)
bonobo_obj_sparse.run_bonobo(keep_in_memory=True, output_fmt='.hdf', sparsify=True, output_folder='../data/processed/bonobo_sparse_pvals/', save_pvals=False)
Here are the main functions and classes in the BONOBO module: