Home¶
netZooPy is a catalog of methods for the reconstruction and analysis of gene regulatory networks.
Available animals are: (gpu)PANDA, (gpu)LIONESS, (gpu)PUMA, SAMBAR, CONDOR, OTTER, and DRAGON.
netZooPy has merged of the following repositories and forks:
pypanda from David Van Ijzendorn,
Alessandro Marin’s pypanda and Marieke Kuijjer’s pypuma fork, and
Cho-Yi Chen’s fork.
Getting started¶
Documentation¶
Netzoopy also has a command line interface that allows to run the animal methods from the command line, for example:
netzoopy panda --e expression.txt --m motif.txt --p ppi.txt --o output_panda.txt
Check the documentation below for a full list of options.
- Changelog
- 0.9.6 (2022-06-10)
- 0.9.5 (2022-05-24)
- 0.9.4 (2022-05-20)
- 0.9.2 (2022-03-04)
- 0.9.0 (2022-02-11)
- 0.8.0 (2021-06-08)
- 0.7.2 (2020-07-18)
- 0.7.1 (2020-06-27)
- 0.7.0 (2020-01-18)
- 0.6.2 (Stockholm) (2020-05-15)
- 0.6.1 (2020-01-18)
- 0.5.0 (2019-11-22)
- 0.4.0 (2019-11-18)
- 0.3.0 (2019-11-14)
- 0.2.0 (2019-11-13)
- 0.1.1 (2019-9-3)
- 0.1.0 (2019-7-26)